Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs1433318 chr3:136666454 C/T 0.000469 177 22.15 27.33 23.03 KM Plot
PCPG rs1433319 chr3:136666599 A/G 0.000469 177 22.15 27.33 23.03 KM Plot
PCPG rs143347140 chr13:27131826 G/T 0.000143 177 25.77 24.37 13.17 KM Plot
PCPG rs143405823 chr12:56723719 T/C 1.01E-7 177 25.35 29.13 0.8 KM Plot
PCPG rs143532254 chr13:114168552 T/TC 3.87E-12 178 24.17 29.95 3.32 KM Plot
PCPG rs143662042 chr7:105147639 C/T 5.04E-5 178 20.17 28.95 2.28 KM Plot
PCPG rs143702574 chr11:18144836 T/A 3.28E-5 177 27.23 24.1 6.7 KM Plot
PCPG rs143746957 chr15:43374328 ACT/A 2.31E-14 177 25.87 24.53 3.17 KM Plot
PCPG rs143797020 chr10:69732020 G/A 0 177 25.87 18.2 2.28 KM Plot
PCPG rs143798139 chr16:90026005 C/A 1.26E-8 172 25.67 20.2 6.62 KM Plot
PCPG rs143838827 chr17:2102962 G/A 0.000351 177 25.97 16.32 25.62 KM Plot
PCPG rs143935888 chr16:88680345 A/AG 0.000383 174 25.53 24.35 14.47 KM Plot
PCPG rs143979396 chr15:39761449 TA/T 0.000433 176 24.85 27.43 26.33 KM Plot
PCPG rs144039725 chr7:76711319 G/A 0.000314 172 25.67 24.53 14.57 KM Plot
PCPG rs144124512 chr20:6010524 C/CA 0 176 25.53 22.63 2.93 KM Plot